;
; Generated at: 2015-11-11T06:06:34
; This file was generated with the following options
;	--workflow	drake.yml
;

;
; Samples: SAMPLE2, SAMPLE1
;
;
; Starting Workflow
;

;
; Starting backup
;



;
; Variables 
; Indir: /home/jillian/projects/perl/BioX-Workflow/example
; Outdir: /home/jillian/projects/perl/BioX-Workflow/example/OUT/backup
; Local Variables:
;	INPUT: {$self->indir}/{$sample}.csv
;	OUTPUT: {$self->outdir}/{$sample}.csv
;	thing: other thing
;

/home/jillian/projects/perl/BioX-Workflow/example/OUT/backup/SAMPLE2.csv <- /home/jillian/projects/perl/BioX-Workflow/example/SAMPLE2.csv
	cp $INPUT $OUTPUT

/home/jillian/projects/perl/BioX-Workflow/example/OUT/backup/SAMPLE1.csv <- /home/jillian/projects/perl/BioX-Workflow/example/SAMPLE1.csv
	cp $INPUT $OUTPUT


;
; Ending backup
;


;
; Starting grep_VARA
;



;
; Variables 
; Indir: /home/jillian/projects/perl/BioX-Workflow/example/OUT/backup
; Outdir: /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA
; Local Variables:
;	OUTPUT: {$self->outdir}/{$sample}.grep_VARA.csv
;	INPUT: {$self->outdir}/{$sample}.csv
;

/home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA/SAMPLE2.grep_VARA.csv <- /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA/SAMPLE2.csv
	echo "Working on /home/jillian/projects/perl/BioX-Workflow/example/OUT/backup/SAMPLE2csv"
	grep -i "VARA" /home/jillian/projects/perl/BioX-Workflow/example/OUT/backup/SAMPLE2.csv >> /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA/SAMPLE2.grep_VARA.csv \
	|| touch /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA/SAMPLE2.grep_VARA.csv

/home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA/SAMPLE1.grep_VARA.csv <- /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA/SAMPLE1.csv
	echo "Working on /home/jillian/projects/perl/BioX-Workflow/example/OUT/backup/SAMPLE1csv"
	grep -i "VARA" /home/jillian/projects/perl/BioX-Workflow/example/OUT/backup/SAMPLE1.csv >> /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA/SAMPLE1.grep_VARA.csv \
	|| touch /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA/SAMPLE1.grep_VARA.csv


;
; Ending grep_VARA
;


;
; Starting grep_VARB
;



;
; Variables 
; Indir: /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA
; Outdir: /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARB
; Local Variables:
;	OUTPUT: {$self->outdir}/{$sample}.grep_VARA.grep_VARB.csv
;	INPUT: {$self->outdir}/{$sample}.grep_VARA.csv
;

/home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARB/SAMPLE2.grep_VARA.grep_VARB.csv <- /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARB/SAMPLE2.grep_VARA.csv
	grep -i "VARB" /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA/SAMPLE2.grep_VARA.csv >> /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARB/SAMPLE2.grep_VARA.grep_VARB.csv || touch /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARB/SAMPLE2.grep_VARA.grep_VARB.csv

/home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARB/SAMPLE1.grep_VARA.grep_VARB.csv <- /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARB/SAMPLE1.grep_VARA.csv
	grep -i "VARB" /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARA/SAMPLE1.grep_VARA.csv >> /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARB/SAMPLE1.grep_VARA.grep_VARB.csv || touch /home/jillian/projects/perl/BioX-Workflow/example/OUT/grep_VARB/SAMPLE1.grep_VARA.grep_VARB.csv


;
; Ending grep_VARB
;

;
; Ending Workflow
;
